ESTED_CONTENT doesn’t have an effect on the information and facts in the RELATION_ELEMENT.
ESTED_CONTENT doesn’t impact the data in the RELATION_ELEMENT. The NESTED_CONTENT may very well be nested to arbitrary depth, with every successive layer describing or clarifying the annotation inside which it is embedded. In this format, the annotation of an element is situated buy XMU-MP-1 within a single rdf:RDF element contained inside an SBML annotation element. The annotation element can contain other elements in any order as described in Section 3.2.4. The format described within this section only defines the form of the rdf:RDF element. The containing SBML SBase element must have a metaid attribute worth. (As this attribute is of your kind ID its value must one of a kind towards the entire SBML document.) The very first element on the rdf:RDF element must be an rdf:Description element with an rdf:about attribute. The worth in the rdf:about attribute must be of the form string where the string component is equal to the worth of your metaid attribute in the containing SBML element. This format does not define the kind of subsequent subelements in the rdf:RDF element. In distinct, the special rdf:RDF element contained inside the annotation can contain other rdf:Description, which content may be any valid RDF. The rdf:Description element can contain only an optional model history section (see Section 6.6) followed by a sequence of zero or much more BioModels relation components. The optional model history section can only be present within an SBML Model element. The distinct style of the relation components will differ depending on the partnership amongst the SBML element and referenced info or resource. While Section six.five describes the detailed semantics of every on the relation element forms, the content of those elements follows the identical type. The BioModels qualifiers relation elements need to only contain a single rdf:Bag element which in turn must only contain one particular or much more rdf:li elements, and might contain nested content supplying added annotations concerning the contents of your rdf:Bag. The rdf:li components have to only have a rdf:resource attribute containing a URI referring to an facts resource (See Section six.4). Note that the a variety of namespaces ( xmlns:rdf, xmlns:dcterms, and so forth.) could be declared in any order, and that only the namespaces which can be really made use of want be declared. If no vcard terms are made use of in a certain annotation, for example, the line xmlns:vcard”http: w3.org200vcardrdf3.0″ is optional. Annotations in PubMed ID:https://www.ncbi.nlm.nih.gov/pubmed/23637907 this format could be located at various depths inside a model component.Author Manuscript Author Manuscript Author Manuscript Author ManuscriptJ Integr Bioinform. Author manuscript; obtainable in PMC 207 June 02.Hucka et al.Page6.4 Use of URIsAuthor Manuscript Author Manuscript Author Manuscript Author ManuscriptThe format represents a set of relationships amongst the SBML element along with the resources referred to by the contained rdf:resource attribute values. The BioModels relation elements basically define the type of the connection. For instance, a Species element representing a protein might be annotated having a reference for the database UniProt by the http:identifiers.orguniprotP2999 resource identifier, identifying specifically the protein described by the Species element. This identifier maps to a distinctive entry in UniProt that is by no means deleted in the database. In the case of UniProt, this really is the “accession” of your entry. When the entry is merged with an additional one, each “accession” are conserved. Similarly inside a controlled vocabulary resource, each and every term is connected.
