Sistently higher (less negative) in RS treatment II . RS treatment I . control for both planted and unplanted microcosms (Fig. 4A). The d13C values of the dissolved CH4 in planted microcosms (Fig. 4A) were similar to those of the emitted CH4 (Fig. 2B). In the planted microcosms, dissolved CO2 concentrations were between 4.0 and 5.5 mM independently of the treatment and the vegetation period (Fig. 3B). The d13C of the dissolved CO2 exhibited a temporal pattern similar to that of CH4 and was again consistently higher (less negative) in RS treatment II . RS treatment I . control (Fig. 4B). However, d13C of dissolved CO2 was in general higher (less negative) than that of CH4.For calculation of fROC, first of all the d13C of the CH4 and CO2 produced from ROC had to be determined. The data, which were calculated using eq. (4), are shown in Table 1. The d13C of CH4 produced from ROC was about 260 on average (range of 267 to 249 ) during the whole vegetation period, though fluctuations on individual sampling dates, at tillering stage in particular, were rather high (Table 1). The d13C values of CO2 produced from ROC were about 231 at tillering stage and Epigenetic Reader Domain increased to around 211 to 24 subsequently (Table 1). Values of fROC were then calculated using eq. (2) and (3). Both equations gave similar values, but those obtained with eq. (2) showed higher standard deviations than those obtained with eq. (3). Only the latter values are shown in Fig. 6 and 7. ROC was found to make a major contribution (41?3 ) to CH4 production over the entire vegetation period (Fig. 6A). For CO2 production, ROC had even a higher importance (43?6 ) (Fig. 7A).5. Partitioning CH4 and CO2 produced in rice microcosmsFigure 2. Seasonal change of (A) CH4 emission rates and (B) d13C of CH4 emitted 18055761 in planted microcosms with and without treatment with 13C-labeled RS; means ?SD (n = 4). The Autophagy differences between the treatments over time were examined using Duncan post hoc test of a oneway ANOVA. Different letters on the top of bars indicate significant difference (P,0.05) between the data. doi:10.1371/journal.pone.0049073.gSources of Methane Production in Rice FieldsFigure 3. Temporal change of the concentrations of dissolved (A) CH4 and (B) CO2 in planted microcosms with and without addition of 13C-labeled RS; means ?SD (n = 4). The differences between the treatments over time were examined using Duncan post hoc test of a oneway ANOVA. Different letters on the top of bars indicate significant difference (P,0.05) between the data. doi:10.1371/journal.pone.0049073.gThe fractions of CH4 and CO2 produced from RS (fRS) were calculated using eq. (7). Values of d13C were obtained from the CH4 (Fig. 4C) and CO2 (Fig. 4D) produced in soil samples from planted microcosms. Values of fRS were determined to be in a range of 12?4 for CH4 production (Fig. 6B) and 11?1 for CO2 production (Fig. 7B). Finally, fSOM was calculated by difference to fROC and fRS, being in a range of 23?5 of CH4 (Fig. 6C) and 13?6 of CO2 production in soil from planted and straw-treated 
microcosms (Fig. 7C).6. Partitioning CH4 and CO2 dissolved in rice microcosmsSimilarly as for the production of CH4 and CO2 (see above), the gases dissolved in the rice microcosms were also used for determination of the partitioning of their origin from ROC, RS, and SOM using the equations described above. In this case, values of d13C were from the CH4 and CO2 dissolved in pore water of planted and unplanted microcosms (Fig. 4A and B.Sistently higher (less negative) in RS treatment II . RS treatment I . control for both planted and unplanted microcosms (Fig. 4A). The d13C values of the dissolved CH4 in planted microcosms (Fig. 4A) were similar to those of the emitted CH4 (Fig. 2B). In the planted microcosms, dissolved CO2 concentrations were between 4.0 and 5.5 mM independently of the treatment and the vegetation period (Fig. 3B). The d13C of the dissolved CO2 exhibited a temporal pattern similar to that of CH4 and was again consistently higher (less negative) in RS treatment II . RS treatment I . control (Fig. 4B). However, d13C of dissolved CO2 was in general higher (less negative) than that of CH4.For calculation of fROC, first of all the d13C of the CH4 and CO2 produced from ROC had to be determined. The data, which were calculated using eq. (4), are shown in Table 1. The d13C of CH4 produced from ROC was about 260 on average (range of 267 to 249 ) during the whole vegetation period, though fluctuations on individual sampling dates, at tillering stage in particular, were rather high (Table 1). The d13C values of CO2 produced from ROC were about 231 at tillering stage and increased to around 211 to 24 subsequently (Table 1). Values of fROC were then calculated using eq. (2) and (3). Both equations gave similar values, but those obtained with eq. (2) showed higher standard deviations than those obtained with eq. (3). Only the latter values are shown in Fig. 6 and 7. ROC was found to make a major contribution (41?3 ) to CH4 production over the entire vegetation period (Fig. 6A). For CO2 production, ROC had even a higher importance (43?6 ) (Fig. 7A).5. Partitioning CH4 and CO2 produced in rice microcosmsFigure 2. Seasonal change of (A) CH4 emission rates and (B) d13C of CH4 emitted 18055761 in planted microcosms with and without treatment with 13C-labeled RS; means ?SD (n = 4). The differences between the treatments over time were examined using Duncan post hoc test of a oneway ANOVA. Different letters on the top of bars indicate significant difference (P,0.05) between the data. doi:10.1371/journal.pone.0049073.gSources of Methane Production in Rice FieldsFigure 3. Temporal change of the concentrations of dissolved (A) CH4 and (B) CO2 in planted microcosms with and without addition of 13C-labeled RS; means ?SD (n = 4). The differences between the treatments over time were examined using Duncan post hoc test of a oneway ANOVA. Different letters on the top of bars indicate significant difference (P,0.05) between the data. doi:10.1371/journal.pone.0049073.gThe fractions of CH4 and CO2 produced from RS (fRS) were calculated using eq. (7). Values of d13C were obtained from the CH4 (Fig. 4C) and CO2 (Fig. 4D) produced in soil samples from planted microcosms. Values of fRS were determined to be in a range of 12?4 for CH4 production (Fig. 6B) and 11?1 for CO2 production (Fig. 7B). Finally, fSOM was calculated by difference to fROC and fRS, being in a range of 23?5 of CH4 (Fig. 6C) and 13?6 of CO2 production in soil from planted and straw-treated microcosms (Fig. 7C).6. Partitioning CH4 and CO2 dissolved in rice microcosmsSimilarly as for the production of CH4 and CO2 (see above), the gases dissolved in the rice microcosms were also used for determination of the partitioning of their origin from ROC, RS, and SOM using the equations described above. In this case, values of d13C were from the CH4 and CO2 dissolved in pore water of planted and unplanted microcosms (Fig. 4A and B.
